Re: [Freesurfer] convert mnc->analyze->mgz

p.s. are you going through analyze? You should avoid.

Bruce On Thu, 27 Sep 2007, Doug Greve wrote:

How do you know it is left-right swapped? What tool are you using to visualize it? Do you have a fiducial?

Olivier Coulon wrote:

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Hi everyone,

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but then, when I do mri_convert -it analyze -i subject -o subject.mgz, the volume is shifted to one side (in addition to left/right swapped). If you look at the coronal sections I'm attaching, you see that a piece of ear the right ear is appearing at the left.

I also have this problem of left/right inversion and I cannot figure out why this happens. Do we have to specify a --out_orientation string ?

Thanks,

Olivier