Hi,
I need patient specific brain models created by warping atlases to individual MRIs. I want the model to include the Subthalamic Nucleus, Gpi, Thalamus and their surrounding organs. (Cortical segmentation is not necessary). When I use the" recon all "command on one MRI image, I get the error "cannot find mri.dcm". I have copied the MRI in Freesurfer Home directory. I really appreciate it if you can help me with that.
Thank you
Dorsa Ghaffari
On Mon, Jun 27, 2016 at 3:13 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Dorsa
what specific models do you need? The 10-20 hours is to process the data from a single subject at a single timepoint. If you check out our wiki (http://surfer.nmr.mgh.harvard.edu/fswiki) there are lots of tutorials and sample datasets and such
cheers Bruce
On Mon, 27 Jun 2016, Dorsa Haji Ghaffari wrote:
Hi, I am graduate student at the University of Michigan and I am performing research on deep brain stimulation. I want to warp an anatomical brain
atlas
to individual patient MRIs to get the patient specific brain models out
of
it. I chose FreeSurfer to do this and I have installed it on my
computer. I
realized that it takes 10-20 hrs to reconstruct the image. I wanted to
ask
if that is the time for one image? or the whole series of images? I also wanted to ask if there is a step by step tutorial on how to do
this.
Thank you
Dorsa Ghaffari
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