Thank you. I tried the steps and it worked once.
Now I try opening the file and it keeps crushing The only file that opens now without crushing is “freeview $SUBJECTS_DIR/bert/mri/brain.mgz”
Reuben A.
From: fsbuild fsbuild@contbay.com Date: Thursday, December 15, 2022 at 12:14 AM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Cc: Addison, Reuben RAddison@MGHIHP.EDU Subject: Re: [Freesurfer] Freeview quit unexpectedly
External Email - Use Caution
Please try the following:
1) Open a new terminal window and run the bash shell as,
$ arch -arm64 /bin/bash
2) set FS_LICENSE to point to your license.txt file. Say it is in your home directory, e.g., $HOME/license.txt. It can be anywhere but you just have to set FS_LICENSE to its absolute path and test it can be read.
$ ls $HOME/license.txt /Users/<your userid>/license.txt $ export FS_LICENSE=$HOME/license.txt $ head -1 $FS_LICENSE you@youremail.somethingmailto:you@youremail.something <— email you used to register with
3) setup the environment
$ export FREESURFER_HOME=/Applications/freesurfer/7.3.2 $ source $FREESURFER_HOME/SetUpFreeSurfer.sh
-------- freesurfer-darwin-macOS-7.3.2-20220803-878457d -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /Applications/freesurfer/7.3.2 FSFAST_HOME /Applications/freesurfer/7.3.2/fsfast FSF_OUTPUT_FORMAT nii.gz SUBJECTS_DIR /Applications/freesurfer/7.3.2/subjects MNI_DIR /Applications/freesurfer/7.3.2/mni 4) Try running freeview w/o any arguments to see if it opens an empty window.
$ freeview
5) If that worked, quit freeview and then try running freeview to open one of the provided volumes in the 7.3.2 release,
$ freeview $SUBJECTS_DIR/bert/mri/brain.mgz
5) If that worked, then try running freeview on your file again.
- R.