Hi Abi,
the cortical thickness maps are created as part of the recon-all process. Once you complete a reconstruction, there will be ?h.thickness maps for each hemi.
Bruce On Mon, 13 Nov 2006, Abi Gopal wrote:
Hello all
I have a basic question. How do I create cortical thickness maps? I have been through most of the freesurfer tutorial and understand most of the commands. However, I am wondering how I can create a cortical thickness map for some of my own MRI data. Please let me know what steps I should take to do this.
Thanks! Abi