Thanks a lot Martin. I was running it on cluster and my quota was exceeded. You saved my day.
Regards, Nabin
On Thu, Dec 17, 2015 at 3:04 PM, Martin Reuter mreuter@nmr.mgh.harvard.edu wrote:
Hi Nabin,
maybe you run out of disk space at different places?
It should print the command that it was trying to run before it prints the error, try running that command manually from the command line to get more info on what happens.
Best, Martin
On 12/17/2015 08:52 AM, Nabin Koirala wrote:
Hi all,
I am doing longitudinal analysis (recon-all) and while running the long_mri_slopes using the following command, I am getting different errors for each run and its driving me crazy.
The command I am running :
long_mris_slopes --qdec ./qdec/long.qdec.Sub_7_t0t1.dat --meas thickness --hemi lh --do-avg --do-pc1 --do-spc --do-stack --do-label --time years --qcache fsaverage --sd /home/nk/freesurfer/subjects/
I could not make any sense as the errors as they are different every time and sometimes it gets completed aswel. The various errors are :
ERROR 1 : mri_convert splitting qcache stack did not work?
ERROR 1 : mris_label_calc intersect did not work?
ERROR 1 : mri_glmfit did not work?
These are for the same subject and for the same hemisphere. And once it completed for left hemisphere but threw similar error for right hemisphere.
Your suggestions would be very much appreciated.
PS This is not only for one subject but for most of them.
Thank you.
Regards, Nabin
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-- Martin Reuter, PhD Assistant Professor of Radiology, Harvard Medical School Assistant Professor of Neurology, Harvard Medical School A.A.Martinos Center for Biomedical Imaging Massachusetts General Hospital Research Affiliate, CSAIL, MIT Phone: +1-617-724-5652 Web : http://reuter.mit.edu
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