Hi Emma
the surfaces are aligned to fsaverage space, which can be extended into the volume using Lilla's CVS tool. Can you give us more details about what you mean about the Desikan-Killany atlas not aligning properly? You shouldn't look at it directly - you should look at the ?h.aparc.annot. That is the estimate of the DK atlas locations in the individual subject surface.
cheers Bruce
On Sat, 11 May 2019, Bunting, Emma wrote:
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Hi Freesurfer experts,
Does reconall register each T1 to fsaverage space?
And if yes, are the Desikan-Killany and Destrieux atlas labels still applicable?
I am asking because I noticed that when I overlayed the Desikan-Killany atlas onto our reconall outputs they didn’t seem to align properly,
Thanks,
Emma
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