Hi Nick, Thanks for your message. Unfortunately, the topology fixer did not produce a defect_labels file, it seems to have aborted before doing so. Is there a way to make mris_fix_topology produce the defect labels without actually running topology correction? I thought of trying the -correct_defect option with one of the defects that didn't cause problems. Does that make sense? Thanks, Johannes
Nick Schmansky schrieb:
Johannes,
To visualize defect locations:
tksurfer <subjid> lh inflated.nofix
then:
File->Curvature->Load Curvature
select:
surf/lh.defect_labels
and the defects will display in red.
Remember you can click on a defect vertex in tksurfer, then click 'save point' and then in tkmedit, click 'goto saved point', which is handy to see exactly where in a volume things went wrong.
Nick