wow, that looks pretty bad. Can you send us the recon-all.log (or upload the entire subject and we will investigate)? On Tue, 19 Feb 2019, mara alves wrote:
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Hi there,
I ran the recon -all command in two samples, one of young participants and another of older subjects.
The segmentation worked well for young participants, however it seems that for older participants the white.pial segmentation it is being done incorrectly. I believe it is segmenting the gray matter instead (please see the pics attached).
Best, Mara