The image is attached. The following cmd is all I did. tksurfer fsaverage lh inflated -overlay ./fwhm10lh/c1.contrast/sig.mgh And I did not click any button.
I think the image is likely just a mirror image, but I failed to find a "invert" button. Where is the "invert" button?
Best!
Xiangzhen
【小孔成像】http://www.conxz.net
From: Bruce Fischl Date: 2013-06-28 21:56 To: Xiangzhen Kong CC: freesurfer Subject: Re: [Freesurfer] tksurfer display problem can you resend the image? You don't have the "invert" button clicked, do you?
On Fri, 28 Jun 2013, Xiangzhen Kong wrote:
Do you mean the threshold? min=2.0 max=5.0
Thanks!
【小孔成像】http://www.conxz.net
From: Bruce Fischl Date: 2013-06-28 20:57 To: Xiangzhen Kong CC: freesurfer Subject: Re: Re: [Freesurfer] tksurfer display problem sorry, I didn't notice that. What were your min and max set to? On Fri, 28 Jun 2013, Xiangzhen Kong wrote:
Thanks very much. Another problem, do you know why the color bar is inversed in my first email? Might it be related to the right-left weird problem?
【小孔成像】http://www.conxz.net
From: Bruce Fischl Date: 2013-06-28 11:18 To: Xiangzhen Kong CC: freesurfer Subject: Re: [Freesurfer] tksurfer display problem There is no config that would do that. Fsaverage is somewhat unique in th
at
the lh and rh have the same number of vertices. All I can think of is to download it again and see if that fixes your problem Bruce
On Jun 27, 2013, at 10:51 PM, "Xiangzhen Kong" bnucon@gmail.com wrote:
Actually when I just use "tksurfer fsaverage lh inflated", there is the similar problem. And fsaverage was copied from freesufer by recon-all. So I think there might be something wrong with using tksurfer, e.g., config.
【小孔成像】http://www.conxz.net
From: Bruce Fischl Date: 2013-06-28 10:28 To: Xiangzhen Kong CC: freesurfer Subject: Re: [Freesurfer] tksurfer display problem Are you sure you didn't accidentally copy the rh over lh
On Jun 27, 2013, at 9:31 PM, "Xiangzhen Kong" bnucon@gmail.com wrote:
Hi all.I want to display a result with tksurfer. The cmd is here: tksurfer fsaverage lh inflated -overlay ./fwhm10lh/c1.contrast/sig.mgh That is, I want to display the result of the left hemi. However, to my surprise, the plot seems like on the right hemi of the brain. In addition, the color bar is also strange. The plot is attached. I wonder whether this is normal or something may be wrong.
【小孔成像】http://www.conxz.net
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