Try this
cd $SUBJECTS_DIR/subject/scripts mri_annotation2label --subject vol17 --hemi rh --lobesStrict lh.lobesfile mris_anatomical_stats -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.lobesfile.stats -b -a ../label/lh.lobesfile.annot subject lh white
doug
On 10/05/2012 09:53 AM, Carolina Valencia wrote:
Hi FS users and developers,
I need to obtain the volume per lobe (occipital, parietal, temporal, frontal) in a particular subjects and if it is possible divided by gray and white matter. I found similar topics in the mailing list, but I don't succeed to get this values. I follow the instructions for the FSv5.1 Using mri_annotation2label and mris_anatomical_stats but I got values for each hemisphere instead of lobes. mri_annotation2label --subject vol17 --hemi rh --lobesStrict rhlobesfile mri_annotation2label --subject vol17 --hemi lh --lobesStrict lhlobesfile then: mris_anatomical_stats vol17 rh mris_anatomical_stats vol17 lh I got values number of vertices = 115348 total surface area = 76188 mm^2 total gray matter volume = 282811 mm^3 average cortical thickness = 3.071 mm +- 1.034 mm average integrated rectified mean curvature = 0.149 average integrated rectified Gaussian curvature = 0.106 folding index = 4797 intrinsic curvature index = 391.1
Can somebody guide me?
Thank you in advance,
--
*Carolina Valencia
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