You can try mris_transform, although you might need to convert the nonlinear warp to our format. I’m pretty sure others have done this, so maybe someone else can comment?
Cheers Bruce
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Aaron Tanenbaum Sent: Friday, March 3, 2023 9:59 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Apply a nonlinear transform to a surface.
External Email - Use Caution I think that only works for gifti files. I need it in freesurfer coordinates. Thank you for responding.
On Fri, Mar 3, 2023, 7:30 PM Glasser, Matt <glasserm@wustl.edumailto:glasserm@wustl.edu> wrote:
External Email - Use Caution You can do this with wb_command. Dunno if FreeSurfer offers this.
Matt.
From: <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Aaron Tanenbaum <aaron.b.tanenbaum@gmail.commailto:aaron.b.tanenbaum@gmail.com> Reply-To: Freesurfer support list <Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu> Date: Friday, March 3, 2023 at 7:26 PM To: Freesurfer <Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] Apply a nonlinear transform to a surface.
External Email - Use Caution I am working on a project that will involve applying nonlinear work to a freesurfer surface. This project is in its infancy. I have not figured out all the details. The nonlinear transform will be in either FNIRT or ANTS format. Does anyone know how to do this?
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