3 Feb
2016
3 Feb
'16
11:54 a.m.
Dear freesurefr experts,
Hope this mail finds you all doing well. I want to calculate hippocampal subfield volume using T2w mages. Is the recon-all command same as we do for the T1images (recon-all -i input to T1.nii.gz -s 001 -all)?
I was not able to understand the recon-all command for the T2w images. if you can please explain it to me:
recon-all -subject subjectname -i /path/to/input_volume -T2 /path/to/T2_volume -T2pial -all
what is -i here (which input volume)? Since, -T2 is the T2 images (dcm or nifti) I am going to feed for processing.
Appreciate all you help!
Best wishes and regards,
Sampada
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Sampada Sinha