To check it with tkregister2, you can:
tkregister2 --mov $FREESURFER_HOME/average/RB_all_2008-03-26.gca \ --targ ../brainmask.mgz --lta-inv talairach.lta --reg talairach.lta.reg.dat \ --surfs --s $subject
I don't have anyway to actually save the result at this time.
doug
Jeff Sadino wrote:
Hello,
I have several subjects with bad surfaces in fs 5.0.0. After checking their talairach.lta file, these transforms are all bad. I tried using tkregister2 to create a good talairach.lta file, but it just wasn't working. I tried rerunning these subjects in fs 5.1.0, and their talairach.lta files are all good. Can I just copy the fs510 talairach.lta file to the fs500 subject folder, or will that cause other issues that are not obvious? As a side note, what would the tkregister2 command be to create the lta file?
Thank you, Jeff Sadino
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