The version 4 analysis from mkanalysis-sess is not compatible with version 5. You will have to run mkanalysis-sess again. doug
On 12/12/11 6:48 PM, Joe Andreano wrote:
Hello folks,
I'm trying to reanalyze some old data that was originially analyzed in freesurfer version 4. Because the code I was using was from 4.0, I set the environment to 4 before starting, then made a new analysis and a few new contrasts. When I tried to run selxavg3-sess with the following command:
selxavg3-sess -analysis nmdm_ALL42_V_fix -sf SESSID_ALL_FINAL -df .
I got the following error message:
/autofs/space/albus_003/users/nmdm_2/nmdm_004
$id:fastselxavg3.m, v 1.88.2.5 2010/11/11 16:55:08 greve Exp $ /usr/local/freesurfer/stable5_0_0/fsfast/toolbox/fast_selxavg3.m /usr/local/freesurfer/stable5_0_0/fsfast/toolbox/fast_ldanaflac.m /usr/local/freesurfer/stable5_0_0/matlab/MRIread.m
outtop = /autofs/space/albus/3/users/nmdm_2 Extension format = nii.gz ??? Reference to non-existent field 'mcstem'
Error in ==> fast_ldanaflac at 171 if(isempty(flac.mcstem))
Error in ==> fast_selxavg3 at 55 flac0=fast_ldanaflac(analysis);
ERROR: fast_selxavg3() failed\n
Note that I have confirmed that I am indeed running version 4, but the commands called in the error ("/usr/local/freesurfer/stable5_0_0/fsfast/toolbox/fast_selxavg3.m", etc.) are referencing version 5. Note also that the code being used here is adapted directly from an earlier analysis which was run in version 4 and which I know worked without errors.
Anybody have any idea what's happening here? Even some information on what 'mcstem', or ldanaflac do would be helpful.
(I have attached my analysis.info http://analysis.info file)
Thanks, Joe Andreano
Joseph M. Andreano, PhD Research Fellow Interdisciplinary Affective Science Lab Massachusetts General Hospital _________________________________
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