Jose,
The mris_anatomical_stats command that you show is correct.
For wm values, try using mri_segstats (--help), using wmparc.mgz as input, and the --slabel arg.
Nick
On Thu, 2009-04-02 at 16:07 +0200, Jose Luis Cantero Lorente wrote:
Hi,
I would like to obtain gray matter volume (not thickness) values for several new cortical ROIs that I have created with tkmedit, but to my knowledge this is not straight-forward with Freesurfer. We have tried this option:
mris_anatomical_stats -l ?h.name.label <subject >
Is that correct for my purpose? Could anybody tell me if there is another more correct way to aim this goal by using Freesurfer?
How can I get the white matter volume values for the same ROIs?
Any help would be very welcome.
Best, Jose
Jose Luis Cantero, Ph.D. Laboratory of Functional Neuroscience Department of Physiology, Anatomy, and Cellular Biology University Pablo de Olavide Ctra. de Utrera, Km.1 41013 - Sevilla
- Spain -
Phone: +34 954 977433 Fax: +34 954 349151 Email: jlcanlor@upo.es http://www.upo.es/neuroaging/es/
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