Why are you using stable3? If that's what you really want, then you need to use version 3 of FSL, eg /usr/pubsw/packages/fsl/3.3.7
doug
jake@nmr.mgh.harvard.edu wrote:
Hello,
I received the following error: (csh executable, ran from /autofs/homes/014/jake/AnalysisPrograms/CD_DMRFASL_ctrl2_ContrastAnalysis.csh)
/autofs/space/amaebi_035/users/ablood/DMRF_ASL/CD_DMRFASL_ctrl2 Mon May 19 10:16:02 EDT 2008 /autofs/space/amaebi_035/users/ablood/DMRF_ASL/CD_DMRFASL_ctrl2/bold /space/amaebi/35/users/ablood/DMRF_ASL RunList 019 020 021 022 023 024
/autofs/space/amaebi_035/users/ablood/DMRF_ASL/CD_DMRFASL_ctrl2/bold ipfsl -i 019/fmc4 -o 019/fmcsm4 -pct .1 -fwhm 4 -fmt bhdr
ERROR: cannot find /usr/pubsw/packages/fsl/current/bin/ip ERROR: ipfsl failed ERROR: spatialsmooth-sess failed
bugr:
REESURFER_HOME: /usr/local/freesurfer/stable3
Build stamp: freesurfer-Linux-centos4-stable-v3.0.5-20070717
RedHat release: CentOS release 5 (Final)
Kernel info: Linux 2.6.18-8.1.15.el5 i686
NMR Center info (/space/freesurfer exists):
machine: striatum
SUBJECTS_DIR: /space/sake/3/users/inverse/subjects (looking at logfile, for the command dir is /space/amaebi/35/users/ablood/DMRF_ASL.)
PWD: /space/amaebi/35/users/ablood/DMRF_ASL/log
(logfile in log directory is preproc-CD_DMRFASL_ctrl2-bold.log)
If anyone can help me, (im new to this) I would greatly appreciate it.
Thank you in advance,
Jake
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