Hi Rob,
I think this might be related to the same 5.1 version mismatch I indicated in my previous email to you. Could you please try if things start working when you use the official FS release?
Thanks,
Koen
On Mon, Feb 6, 2012 at 1:59 PM, Rob Tennyson tenny@nmr.mgh.harvard.edu wrote:
Hi Experts,
So I found a similar question posted in December, but I was not able to fix my own results based on the reply to that message.
Anyway, I ran "recon-all -s -bert -hippo-subfields" (with my filename) and finished without error.
Now, I am attempting to view the segmentation in freeview using:
cd $SUBJECTS_DIR/bert/mri freeview nu.mgz \ -p-labels posterior_left_* posterior_Left-Hippocampus.mgz \ -p-labels posterior_right_* posterior_Right-Hippocampus.mgz \ -p-prefix posterior_ -p-lut $FREESURFER_HOME/FreeSurferColorLUT.txt
ew using:
But I get the error messages: "Failed to load posterior_left_*" and "Failed to load posterior_right_*"
The folder (bert/mri) has all of the correct segmentation files. Is there something I am doing wrong or some way to troubleshoot this problem?
Thanks!
Rob
-- Rob Tennyson Research Coordinator, Bar Lab Massachusetts General Hospital Phone: 617-724-0413
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