Yes I found it :) Thank you for your help!
Sincerely,
EK.
2012/5/4 Bruce Fischl fischl@nmr.mgh.harvard.edu
run:
mri_info $SUBJECTS_DIR/$subject/mri/**orig.mgz
and you should see that it is 1mm isotropic
cheers Bruce On Fri, 4 May 2012, EK Kim wrote:
Thank you, but again I think that there might be no internal convert in
my data from the recon-all log files.
The other data set I used had records about internal convert in their recon-all log file representing as (1 1 1)mm but this data was not.
So I worry about whether correct internal convert was preprocessed or not. How can I confirm the processes?
Sorry for bothering you. Thank you in advance.
2012? 5?4?????Bruce Fischl<fischl@nmr.mgh.harvard.**edufischl@nmr.mgh.harvard.edu>?? ??:
if you give it to recon-all it will convert it internally, so you don't
need to convert it yourself
On Fri, 4 May 2012, EK Kim wrote:
Thank you for the answer. But I still confuse to convert the data. Does this mean is it 'not okay' to convert the anisotropic data to the isotropic? Then should I analyze the original one?
2012? 5?4?????Bruce Fischl<fischl@nmr.mgh.harvard.**edufischl@nmr.mgh.harvard.edu>??
??:
Hi EK
it's an empirical question. That is *very* anisotropic, so I suspect
that
there will be unavoidable biases in things like thickness maps which
will be
more accurate in regions in which the folds happen to place the cortex
in
the high resolution plane. That said, if the CNR is good enough it will probably generate reasonable surfaces.
cheers Bruce On Fri, 4 May 2012, EK Kim wrote:
Dear freesurfers,
I wondered is it okay to analyze isotropic data which was converted
to
the
anisotropic one.
The original data has (0.390625, 0.390625, 1.5) mm size and (512,
512,
voxels. It obtained from 3T scanner.
I know the Freesurfer recommend isotropic data (1,1,1)mm. Does it have any problem to use the data I just transformed?
To do this, I rescaled the images and did bilinear interpolation to
create
an isotropic 8-bit version of images.
Thanks for any help.
EK
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