Dear all, unfortunately, I have the problem with the creation of my average brain. The command is: make_average_subject subjects1 ... --out myaverage. During the creation of my average brain with freesurfer, I get the
following ERROR message.
getpwdcmd: command not found ERROR: format for rh.orig.avg.area.mgh not recognized. ERROR: make_average_surface
Would you be so kind and help me with the solution for this problem? Thanks and yours sincerely, Viola
-----Ursprüngliche Nachricht----- Von: freesurfer-bounces@nmr.mgh.harvard.edu im Auftrag von Douglas N Greve Gesendet: Mi 21.10.2009 18:38 An: Jürgen Hänggi Cc: Freesurfer Mailinglist Betreff: Re: [Freesurfer] How to flip a surface model?
I have some preliminary tools in development, but they are not ready to be released. There are some very tricky aspects to this that we need to make sure are correct.
doug
Jürgen Hänggi wrote:
Dear FS experts
We investigated patients with unilateral pain. For some patients, the pain was on the left side, for others it was on the right side. We would like to do a group analysis on cortical thickness maps vertex-wisely but we do not know whether it is possible to flip a surface model (e.g. the left cortical thickness map) so that we can pool patients with pain on the left with the patients who have pain on the right.
Is there an easy way to do this?
Thanks in advance Regards Jürgen
Juergen Haenggi Ph.D. (Dr. des.) Division Neuropsychology Institute of Psychology University of Zurich Binzmuehlestrasse 14, PO Box 25 8050 Zurich, Switzerland 0041 44 635 73 97 (phone office) 0041 76 445 86 84 (phone mobile) 0041 44 635 74 09 (fax office) BIN 4.D.04 (office room number) j.haenggi[at]psychologie.uzh.ch (email) http://www.psychologie.uzh.ch/neuropsy/ (website) http://www.juergenhaenggi.ch (private website)
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