Hi all, we are also having some problems with v4.05 (Mac computer PC Tiger)
-we keep getting problems with edit segmentation
All seems well until we perform the following sequance of actions: 1. Press mouse button 3 to erase voxels from a particular ROI. 2. Press mouse button 2 to add voxels to a selected ROI (after having chosen the appropriate label in 'Configure Segmentation Brush' tool option. 3. Then press mouse button 3 to erase voxels (from any region not necessarily what we have just been working on) - Now instead of just erasing it adds the label 'nerve' to area that we want to delete.
We have tried playing around with this, and have now gone back to our older version of freesurfer where this doesn't happen.
We also get the following error message while doing 'Edit Segmentation' which causes the system to crash.
ErrorLog: ---------
syntax error in expression " * 2": unexpected operator * syntax error in expression " * 2": unexpected operator * while executing "expr $nSelection * 2" (procedure "SendSegBrushInfo" line 11) invoked from within "SendSegBrushInfo" invoked from within ".wwEditSegBrushInfoDlog.lfwFill.border.frame.fwFill.fwSegSrc.rbw invoke" ("uplevel" body line 1) invoked from within "uplevel #0 [list $w $cmd]" (procedure "tk::CheckRadioInvoke" line 3) invoked from within "tk::CheckRadioInvoke .wwEditSegBrushInfoDlog.lfwFill.border.frame.fwFill.fwSegSrc.rbw" (command bound to event)
*** *** *** *** *** Liat Levita, PhD Instructor of Psychology in Psychiatry Sackler Institute for Developmental Psychobiology Weill Medical College of Cornell University 1300 York Ave, Box 140 New York, NY 10021
Tel: 212 746 5836 Fax: 212 746 5755 http://www.sacklerinstitute.org/cornell
----- Original Message ----- From: Sebastian Moeller sebastian.moeller@lur.rwth-aachen.de Date: Wednesday, June 18, 2008 4:57 am Subject: [Freesurfer] questions regarding freesurfer 4.0.5
First, if this shows up twice, let m apologise for mixing up my email addresses...
Aloha fellow surfers,
I just installed ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer-Darwin-leopard- i686-stable-pub-v4.0.5-full.dmg on my: intel macbook, running 10.5.3 with 4GB of RAM. A few observations:
- minor: freeview does not seem to be part of the dmg, probably
expected, but from the release notes it is not obvious, whether the
macos version should contain it or not 2) minor, minor: it seems like the whole macos version is built for
32bit only (at least that is what "file `which mri_convert`" and a few other binaries tell me); would it be possible to have a 64bit built
(than my macbook might suffice for surface reconstruction as well).
- scuba dies horribly (tkmedit and tksurfer, however seem to work,
at least they start up and display something), here is the problem report: Path: /opt/freesurfer//bin/scuba.bin Identifier: scuba.bin Version: ??? (???) Code Type: X86 (Native) Parent Process: tcsh [18243]
Date/Time: 2008-06-18 10:10:42.832 +0200 OS Version: Mac OS X 10.5.3 (9D34) Report Version: 6
Exception Type: EXC_BAD_ACCESS (SIGBUS) Exception Codes: KERN_PROTECTION_FAILURE at 0x0000000000000000 Crashed Thread: 0
Thread 0 Crashed: 0 scuba.bin 0x001e5764 0x1000 + 1984356 1 dyld 0x8fe0e723 ImageLoader::recursiveInitialization(ImageLoader::LinkContext const&, unsigned int) + 307 2 dyld 0x8fe0e809 ImageLoader::runInitializers(ImageLoader::LinkContext const&) + 57 3 dyld 0x8fe04102 dyld::initializeMainExecutable() + 146 4 dyld 0x8fe07b5f dyld::_main(mach_header const*, unsigned long, int, char const**, char const**, char const**)
- 2975
5 dyld 0x8fe01872 dyldbootstrap::start(mach_header const*, int, char const**, long) + 8186 dyld 0x8fe01037 _dyld_start + 39
Thread 0 crashed with X86 Thread State (32-bit): eax: 0x00000000 ebx: 0x001e570c ecx: 0x00000002 edx: 0x00000000 edi: 0x00000026 esi: 0x00001000 ebp: 0xbfffd548 esp: 0xbfffd4c0 ss: 0x0000001f efl: 0x00010282 eip: 0x001e5764 cs: 0x00000017 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 cr2: 0x00000000
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-- Sebastian Moeller
Tel.: 04 21 - 2 18 - 78 38 oder 96 91 Fax.: 04 21 - 2 18 - 90 04 GSM: 0 15 77 - 1 90 31 41 moeller@brain.uni-bremen.de
AG Kreiter / FB 2 Institut fuer Hirnforschung III Abteilung Theoretische Neurobiologie Universitaet Bremen Biogarten Hochschulring 16a Postfach 33 04 40 28359 Bremen
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