Can you verify that the disk it is writing to is not full?
Is this an average subject?
doug
John Drozd wrote:
Hello again,
Sorry, I forgot to include the required info:
john
FREESURFER_HOME: /trumpet/downloads/FreeSurfer/freesurfer
Build stamp: freesurfer-Linux-centos4_x86_64-stable-pub-v4.3.0
RedHat release: Fedora release 10 (Cambridge)
Kernel info: Linux 2.6.27.21-170.2.56.fc10.x86_64 x86_64
Please include the following additional information in your report:
subject name: convertedfile
the entire command-line executed: mris_anatomical_stats -mgz -f ../stats/lh.aparc.stats -b -a
../label/lh.aparc.annot -cf ../label/aparc.annot.ctab convertedfile lh
the error message generated: Segmentation fault
optionally include the subject's /script/recon-all.log
On Tue, May 26, 2009 at 2:23 PM, John Drozd <john.drozd@gmail.com mailto:john.drozd@gmail.com> wrote:
Hello, I am running the reconall steps individually for a firts try. I noticed that I get a segmentation fault when I run mris_anatomical_stats as whown below: [jdrozd@trumpet mri]$ mris_anatomical_stats -mgz -f ../stats/lh.aparc.stats -b -a ../label/lh.aparc.annot -cf ../label/aparc.annot.ctab convertedfile lh INFO: assuming MGZ format for volumes. computing statistics for each annotation in ../label/lh.aparc.annot. reading volume /trumpet/downloads/FreeSurfer/freesurfer/subjects/buckner_data/tutorial_subjs/convertedfile/mri/wm.mgz... reading input surface /trumpet/downloads/FreeSurfer/freesurfer/subjects/buckner_data/tutorial_subjs/convertedfile/surf/lh.white... reading input pial surface /trumpet/downloads/FreeSurfer/freesurfer/subjects/buckner_data/tutorial_subjs/convertedfile/surf/lh.pial... reading input white surface /trumpet/downloads/FreeSurfer/freesurfer/subjects/buckner_data/tutorial_subjs/convertedfile/surf/lh.white... reading colortable from annotation file... colortable with 35 entries read (originally /space/amaebi/26/users/buckner_cortical_atlas/scripts/colortable_final.txt) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name Segmentation fault john
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