Hi Anna
try adding -t sulc to the mris_anatomical_stats command line. That tells it to use a "thickness" file named "sulc". Everything that it reports as thickness would then be sulc measures
cheers Bruce
On Wed, 30 Apr 2014, Anna Jonsson wrote:
hi i think what i meant to write was how to find exact values for sulcal depth? using mris_anatomical_stats, so the exact command that would do this?
On Wed, Apr 30, 2014 at 1:32 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: Hi Anna
at the moment we take the mean out of the sulc before writing it, and use that as kind of the definition of the transition from gyral to sulcal. We can add a switch to mris_inflate to inhibit this behavior if you want I suppose. cheers Bruce On Wed, 30 Apr 2014, Anna Jonsson wrote: > Hi I would like get a mean sulcal folding value per hemisphere and roi data. > I have two questions: > > Is possible do sulcal depth analysis using qdec? > > And > > What is the exact command to pass to mris_anatomical_stats to get a mean > sulcal depth value /per hemisphere? I have tried some few variations with no > luck. > > Thank you for your help, > > Kind Wishes, > > Anna > >
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