I mean send your email to the FreeSurfer list as well so that others can answer (which I'll do on this email).
Are you sure you don't have a typo in your command line? You typed "normlalized" instead of "normalized"
cheers Bruce
On Wed, 10 Jul 2013, fatma zribi wrote:
Hi Bruce,
i didn't understand 'cc' of your message..
i try to execute mris_info : mris_info s000_open_brain_sanlm_+TIR_normlalized/surf/lh.curv MRISread(s000_open_brain_sanlm_+TIR_normlalized/surf/lh.curv): could not open file No such file or directory could not open s000_open_brain_sanlm_+TIR_normlalized/surf/lh.curv
but the folder of the subject exist and the file lh.curv exist too
I will be very grateful if you accept to help me.
With best regards,
Fatma
2013/7/10 Bruce Fischl fischl@nmr.mgh.harvard.edu Hi Fatma
can you cc the list on these emails? Are you sure the file exists with that exact name? Can you run mris_info on it? cheers Bruce On Wed, 10 Jul 2013, fatma zribi wrote: Hi Bruce, Thank you very much for your help but it still don't work. mris_register s000_open_brain_sanlm_+TIR_normlalized/surf/lh.sphere avg_all_subjects_SD/lh.reg.template.tif lh.sphere_reg $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ $Id: mrisurf.c,v 1.693.2.2 2011/04/27 19:21:05 nicks Exp $ reading surface from s000_open_brain_sanlm_+TIR_normlalized/surf/lh.sphere... MRISread(s000_open_brain_sanlm_+TIR_normlalized/surf/lh.sphere): could not open file No such file or directory mris_register: could not read surface file s000_open_brain_sanlm_+TIR_normlalized/surf/lh.sphere No such file or directory note that the file exist in the folder and i have changed the SUBJECT_DIR to the appropriate folder Thank you very much for your help with best regards, Fatma 2013/7/9 Bruce Fischl <fischl@nmr.mgh.harvard.edu> Hi Fatma don't use the -1 flag if you are regtering to a template, only if you are registering individual surfaces to each other. You probably want the output to be named lh.sphere_reg and go in the s000/surf dir. cheers Bruce On Tue, 9 Jul 2013, fatma zribi wrote: Dear Mr, When I execute mris_register to register one subject to a template., I have this message of error: mris_register -1 s000/surf/lh.sphere avg_all_subjects_SD/lh.reg.template.tif sphere_reg treating target as a single subject's surface... $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ $Id: mrisurf.c,v 1.693.2.2 2011/04/27 19:21:05 nicks Exp $ reading surface from s000_open_brain_sanlm_+TIR_normlalized/surf/lh.sphere... MRISread(s000_open_brain_sanlm_+TIR_normlalized/surf/lh.sphere): could not open file No such file or directory mris_register: could not read surface file s000/surf/lh.sphere No such file or directory note that the file exist in the specifeid SUBJECT_DIR Thank you for your help Fatma The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.