Hi,
if you upload this entire subject to our ftp site we will take a look
cheers Bruce On Fri, 27 Sep 2019, Троицкий Антон Александрович wrote:
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Hello FreeSurfer Developers,
during the processing of patient data an error occurred. I don’t clearly understand a reason for this error. Technical description of this error is
mris_fix_topology(5832,0x7fffc83843c0) malloc: *** error for object 0x7fcf88f2ca50: pointer being freed was not allocated *** set a breakpoint in malloc_error_break to debug 0 defective edges Abort Darwin mac-2ap023-2.fccho-moscow.ru 16.7.0 Darwin Kernel Version 16.7.0: Thu Jan 11 22:59:40 PST 2018; root:xnu-3789.73.8~1/RELEASE_X86_64 x86_64
recon-all -s 2019-09-03_3DBrainView_T1_FSSD_2019-09-26_13-11 exited with ERRORS at Thu Sep 26 17:43:07 MSK 2019
To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
My assumption is that the error associated with memory allocation and its reading.
Is there any suggestion about why it happened and how can I prevent it in the future?
Also, I've attached the recon-all.log in case it's of any use.
- FreeSurfer version: freesurfer-Darwin-OSX-stable-pub-v6.0.0
- Platform: macOS Sierra 10.12.6
- uname -a: Darwin mac-2ap023-2.fccho-moscow.ru 16.7.0 Darwin Kernel
Version 16.7.0: Thu Jan 11 22:59:40 PST 2018; root:xnu-3789.73.8~1/RELEASE_X86_64 x86_64 4) recon-all.log: see attached