1 Feb
2021
1 Feb
'21
2:10 p.m.
External Email - Use Caution
Dear FreeSurfer experts,
I need help trying to understand how the white matter gets parcellated. I have a clinical dataset, which means that the resolution is not as research images, but it ran without a problem. I would like to measure the volume of the basal ganglia and looking at wmparc.mgz I am not sure how Freesurfer decides where a structure ends and the other one begins. I am attaching two images to show what I mean.
I would really appreciate some clarification. I am using FreeSurfer 7.1.1
Thanks in advance. José [image: whiteparc2.png] [image: whiteparc1.png]
