[Freesurfer] Problem with hippocampal subfields segmentation FS v6 - Solved

Hi,

It seemed to be a problem with Java Runtime which I installed because it is required to do the hippocampal subfields segmentation. After starting the Matlab R2012a application itself the problem was gone.

Cheers, Ed

Begin forwarded message:

From: "Gronenschild Ed (NP)" <ed.gronenschild@maastrichtuniversity.nlmailto:ed.gronenschild@maastrichtuniversity.nl> Date: 13 November 2015 08:59:59 CET To: "freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Subject: Problem with hippocampal subfields segmentation FS v6

Hi,

At the very beginning of the hippocampal subfields segmentation the following message window popped up:

segmentSubjectT1_autoEstimateAlveusML cannot be opened because of a problem. Check with the developer to make sure segmentSubjectT1_autoEstimateAlveusML works with this version of Mac OS X. .... etc.

I have installed Matlab runtime and also Java Runtime

Environment: Mac OSX10.7.5 the command "uname -m" outputs x86_64 FreeSurfer V6 beta release 15 Oct 2015

Cheers, Ed