17 Mar
2010
17 Mar
'10
4:37 p.m.
Try running this: recon-all -skullstrip -no-wsgcaatlas -s <subjid>
If that goes through without error, you can finish processing your data by running: recon-all -autorecon2 -autorecon3 -s <subjid>
Allison
--
On Wed, 17 Mar 2010, Gabriel Go.Es. wrote:
>
>
> I was trying to run a recon-all and I recibe an error message, wich you can find attached (recon-all.log),
> it appears to be a rpoblem with the skull stripping (the watershed) i tryed the flag -nowatershed, but the recon does not work. what can i do???
> any help will be so apreciated
>
> Best Regards
> Gabriel
>
> ****************TEMPLATE DEFORMATION****************
>
> second estimation of the COG coord: x=127,y=105, z=104, r=9864 iterations
> GLOBAL CSF_MIN=0, CSF_intensity=9, CSF_MAX=38 , nb = 22419
> RIGHT_CER CSF_MIN=0, CSF_intensity=9, CSF_MAX=51 , nb = 1530
> LEFT_CER CSF_MIN=0, CSF_intensity=9, CSF_MAX=45 , nb = 1332
> RIGHT_BRAIN CSF_MIN=0, CSF_intensity=9, CSF_MAX=35 , nb = 9837
> LEFT_BRAIN CSF_MIN=0, CSF_intensity=9, CSF_MAX=37 , nb = 9522
> OTHER CSF_MIN=2, CSF_intensity=16, CSF_MAX=47 , nb = 198
> mri_watershed Error:
> GLOBAL region of the brain empty !
> Linux localhost.localdomain 2.6.9-34.ELsmp #1 SMP Thu Mar 9 06:23:23 GMT 2006 x86_64 x86_64 x86_64 GNU/Linux
>
> recon-all exited with ERRORS at Mon Mar 15 09:45:02 CET 2010
>
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