Try mri_binarize with the --match option. Look in FreeSurferColorLUT.txt for the match numbers to use.
doug
Jared Price wrote:
Anyone know how to extract a single structure from aseg.mgz? In other words I assume it is possible to use the information in aseg.mgz to extract a single structure such that there is a new.mgz file that contains just the segmentation of the putamen or just of the caudate or whatever. Thanks. Jared
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer