Hello,
I am trying to concatenate my functional data with the following command (Ps: I am relatively new to FreeSurfer):
sxconcat-sess -sf functional_ID_jun22_allSubjects -analysis PCC_Bold_R -contrast bilateral_isthmuscingulate_bold_config -o DMN_Right.
I get an error that says the dof file cannot be found for my 26 scans in $SUBJECTS_DIR. However, running:
find . -name "dof"
The dof file was created for 12 scans. I used the same analysis pipeline for all the scans. I searched the mailing list, and haven't found anything that could help my problem. Any idea why the dof was not created for all scans? How can I create the dof for the remaining scans? Please let me know if you need further details. I am using Freesurfer version 6.0.0.
Any help is very much appreciated.
Please find the terminal output below.
Best wishes, Noah
actrumri[0]:RECONS$ echo $SUBJECTS_DIR /autofs/space/arnold_001/users/Noah/ACTRU_pipeline/ACTRU/Niagen/RECONS actrumri[0]:RECONS$ isxconcat-sess -sf functional_ID_jun22_allSubjects -analysis PCC_Bold_R -contrast bilateral_isthmuscingulate_bold_config -o DMN_Right DMN_Right/PCC_Bold_R/log/isxconcat.log ERROR: cannot find /autofs/space/arnold_001/users/Noah/ACTRU_pipeline/ACTRU/Niagen/RECONS/RIB_668_018_3_recon.long.RIB_668_018/bold/PCC_Bold_R/dof actrumri[0]:RECONS$ find . -name "dof" ./RIB_668_021_1_recon.long.RIB_668_021/bold/PCC_Bold_L/dof ./RIB_668_021_1_recon.long.RIB_668_021/bold/PCC_Bold_V/dof ./RIB_668_021_1_recon.long.RIB_668_021/bold/PCC_Bold_R/dof ./RIB_668_019_1_recon.long.RIB_668_019/bold/PCC_Bold_L/dof ./RIB_668_019_1_recon.long.RIB_668_019/bold/PCC_Bold_V/dof ./RIB_668_019_1_recon.long.RIB_668_019/bold/PCC_Bold_R/dof ./RIB_668_035_3_recon.long.RIB_668_035/bold/PCC_Bold_L/dof ./RIB_668_035_3_recon.long.RIB_668_035/bold/PCC_Bold_V/dof ./RIB_668_035_3_recon.long.RIB_668_035/bold/PCC_Bold_R/dof ./RIB_668_026_1_recon.long.RIB_668_026/bold/PCC_Bold_L/dof ./RIB_668_026_1_recon.long.RIB_668_026/bold/PCC_Bold_V/dof ./RIB_668_026_1_recon.long.RIB_668_026/bold/PCC_Bold_R/dof actrumri[0]:RECONS$ isxconcat-sess -sf functional_ID_jun22_allSubjects -analysis PCC_Bold_L -contrast bilateral_isthmuscingulate_bold_config -o DMN_Left DMN_Left/PCC_Bold_L/log/isxconcat.log ERROR: cannot find /autofs/space/arnold_001/users/Noah/ACTRU_pipeline/ACTRU/Niagen/RECONS/RIB_668_018_3_recon.long.RIB_668_018/bold/PCC_Bold_L/dof actrumri[0]:RECONS$ find . -name "dof" ./RIB_668_021_1_recon.long.RIB_668_021/bold/PCC_Bold_L/dof ./RIB_668_021_1_recon.long.RIB_668_021/bold/PCC_Bold_V/dof ./RIB_668_021_1_recon.long.RIB_668_021/bold/PCC_Bold_R/dof ./RIB_668_019_1_recon.long.RIB_668_019/bold/PCC_Bold_L/dof ./RIB_668_019_1_recon.long.RIB_668_019/bold/PCC_Bold_V/dof ./RIB_668_019_1_recon.long.RIB_668_019/bold/PCC_Bold_R/dof ./RIB_668_035_3_recon.long.RIB_668_035/bold/PCC_Bold_L/dof ./RIB_668_035_3_recon.long.RIB_668_035/bold/PCC_Bold_V/dof ./RIB_668_035_3_recon.long.RIB_668_035/bold/PCC_Bold_R/dof ./RIB_668_026_1_recon.long.RIB_668_026/bold/PCC_Bold_L/dof ./RIB_668_026_1_recon.long.RIB_668_026/bold/PCC_Bold_V/dof ./RIB_668_026_1_recon.long.RIB_668_026/bold/PCC_Bold_R/dof actrumri[0]:RECONS$