I don't know that there is much you can do. Sometimes people will fill in the missing part by cutting-and-pasting from the other hemisphere. This may make it possible to have recon-all finish, though not sure how good the results will be.
On 7/13/2022 5:12 PM, Gumenyuk, Valentina wrote:
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Dear Freesurfer team,
I was trying to run recon - all of the brain ( see below) with large hemorrhage in the right hemisphere. Recon all finished with theanerror ( log is attached) . Please advise what can be done to complete the recon all on this type of the brain abnormality.
Thank you ,
Valia
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