External Email - Use Caution
Bruce, What does "del" mean in the --projdist-avg flag?
Sara Sims Graduate Research Fellow University of Alabama at Birmingham Department of Psychology 205-975-4060 snolin@uab.edu
On 6/26/18, 2:49 PM, "freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Bruce Fischl" <freesurfer-bounces@nmr.mgh.harvard.edu on behalf of fischl@nmr.mgh.harvard.edu> wrote:
Hi Sara check out the help (with --help). For example you could use:
--projdist-avg min max del : average along normal
cheers Bruce On Tue, 26 Jun 2018, Sims, Sara A wrote:
> External Email - Use Caution > > Bruce, > Thanks! So if I set it to say 4mm would it sample from 0-4mm or just from exactly 4mm and ignore things slightly closer to the surface? > My problem would be somethings could be 2mm or 3mm etc. and it's not exactly the same all the way around the brain. > > Sara Sims > Graduate Research Fellow > University of Alabama at Birmingham > Department of Psychology > 205-975-4060 > snolin@uab.edu > > On 6/26/18, 2:27 PM, "freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Bruce Fischl" <freesurfer-bounces@nmr.mgh.harvard.edu on behalf of fischl@nmr.mgh.harvard.edu> wrote: > > Hi Sara > > you can use a negative projdist in mri_vol2surf > > cheers > Bruce > On Tue, 26 Jun 2018, Sims, > Sara A wrote: > > > > > External Email - Use Caution > > > > Hello, > > > > I have outputs from FSL probtrackx that I would like to display on Freesurfer surfaces. If I > > put the volume into freesurfer space how can I get it to sample onto a surface when the > > values are in white matter and not grey matter? To rephrase, how can I pull data from white > > matter (just below the grey matter) and display it on a surface? > > > > > > > > Many thanks, > > > > Sara > > > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > >