Re: [Freesurfer] dice coefficient computing

Hi Nazanin

all our segmentations are in subject space, so it should be pretty straightforward

cheers Bruce On Mon, 9 Jan 2017, N Saf wrote:

Dear freesurfers,

I analysis my T1 MRI with FreeSurfer (aseg.mgz 256x256x256) and I have manual segmentation for hippocampus in my subject space(208x176x176)as well. I want to compute the dice coefficient with one simple Matlab code. how can I do it correctly ?if I want to  bring the aseg to subject space , which command with which options is the best way to do it correctly ?any help can be appreciated.(I did it for the FSL segmentation result but it was simple because the result is in my subject space).

Best Regards, Nazanin