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For 2 subjects that is what you can do.
If you have a lot more, I would suggest to have a look at GNU Parallel [1]. It's also available in the Ubuntu package system.
Best,
Tim
[1] https://www.gnu.org/software/parallel/
On March 5, 2020 at 1:54 AM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
sure, as long as you have more than one core. You can run them in the same terminal as long as you put & at the end of the line
On Thu, 5 Mar 2020, ZhangBo wrote:
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Hello FreeSurfer Developers,
My computer doesn't support cuda. To speed up data processing, could I open two terminal, and in each of them, I first runing:
$> export FREESURFER_HOME=/usr/local/freesurfer $> export FREESURFER_HOME=/SetUpFreeSurfer.sh $> export SUBJECTS_DIR=/usr/local/freesurfer/subjects/
then running: recon-all -s sub-01 -i sub-01_T1w.nii.gz -all (for terminal 1) recon-all -s sub-02 -i sub-02_T1w.nii.gz -all (for terminal 2)
Thanks.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Dr. Tim Schäfer Postdoc Computational Neuroimaging Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany