Hi Eugenio,
It looks like the segmentation is missing all of the left hippocampus in the ASEG.
Is there a way to go in and manually correct this?
Best,
Elizabeth
On Tue, Aug 15, 2017 at 12:54 PM, Iglesias Gonzalez, Eugenio < e.iglesias@ucl.ac.uk> wrote:
Dear Elizabeth,
This is pretty unusual. Would you mind taking a look at aseg.mgz? Does the segmentation of the (whole) left hippocampus look fine in ASEG?
Cheers,
/Eugenio
*From: *freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Elizabeth Hall ehall1027@gmail.com *Reply-To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Date: *Tuesday, 15 August 2017 at 17:32 *To: *"freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu *Subject: *[Freesurfer] Help with hippocampal subfield alignment
Hello FreeSurfer Developers,
I have run the hippocampal-subfields-T1 tag on a MP2RAGE scan for one of my subjects and find that the subfield segmentation for the left hemisphere only is off (pictures attached). No errors were reported in the log.
Is there a way to manually reset the alignment for only one hemisphere? Or is there a reason why it might be failing to segment that hemisphere?
Thank you,
Elizabeth
--
Elizabeth Hall
ehall1027@gmail.com| +1 559 824 6695 <(559)%20824-6695>
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