Hi Bruce,
This is the command and output on a CentOS 7 machine: [dc155@pinto DANI]$ mri_convert 3062.nii.gz -rl MNI152_T1_2mm_brain.nii.gz 3062_MNI.nii.gz mri_convert 3062.nii.gz -rl MNI152_T1_2mm_brain.nii.gz 3062_MNI.nii.gz $Id: mri_convert.c,v 1.146.2.1 2007/11/30 23:18:44 greve Exp $ reading from 3062.nii.gz... Segmentation fault (core dumped)
This is the command and output on a CentOS 6 machine: [dc155@door DANI]$ mri_convert 3062.nii.gz -rl MNI152_T1_2mm_brain.nii.gz 3062_MNI.nii.gz mri_convert 3062.nii.gz -rl MNI152_T1_2mm_brain.nii.gz 3062_MNI.nii.gz $Id: mri_convert.c,v 1.146.2.1 2007/11/30 23:18:44 greve Exp $ reading from 3062.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) reading template info from volume MNI152_T1_2mm_brain.nii.gz... Reslicing using trilinear interpolation writing to 3062_MNI.nii.gz...
Thank you, Danielle
On 1/30/18, 5:44 PM, "freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Bruce Fischl" <freesurfer-bounces@nmr.mgh.harvard.edu on behalf of fischl@nmr.mgh.harvard.edu> wrote:
Hi Danielle
can you post the full command line and screen output?
cheers Bruce On Tue, 30 Jan 2018, Cooke,Danielle ( BIDMC - Neurology ) wrote:
> > Hello, > > > > I recently ran into issues using mri_convert on a CentOS 7 platform while having the same command work fine on CentOS 6. The > error that results is: > > Segmentation fault (core dumped) > > > > I've tried on multiple machines with both operating systems to confirm the issue. I was wondering if you might have any > insights or suggestions on how to fix this. > > > > Thank you! > > Danielle > > > > > _______________________________________________________________________________________________________________________________ > > This message is intended for the use of the person(s) to whom it may be addressed. It may contain information that is > privileged, confidential, or otherwise protected from disclosure under applicable law. If you are not the intended recipient, > any dissemination, distribution, copying, or use of this information is prohibited. If you have received this message in error, > please permanently delete it and immediately notify the sender. Thank you. > >