Hi Shahin, you can do seed-based analysis. In principle you can do this with task data, you just need to adjust your conclusions accordingly. There is no easy to way to only do the analysis on the resting epochs of a blocked design, if that is what you mean. doug
On 10/24/2012 12:55 AM, SHAHIN NASR wrote:
Hi,
I was wondering if we can compare "functional connectivity" between blocks within a run as we do for BOLD signal using freesurfer. Current documentation of freesurfer is for resting state and does not consider conditions that experiment is Blocked Design.
Similar question has been asked previous but nobody answered (see the link below) https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2012-June/024394.html
Regards
-- Shahin Nasr
PhD in Cognitive Neuroscience Martinos Imaging Center, MGH Harvard Medical School