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Dear Dough,
The terminal output: HV_02_11_p2x7 mghRead(/Volumes/DATA_PETMR/data_donatienne/Boston_final_analysis/Donatienne/Analyses_freesurfer/recon_flair/unknown/mri/orig.mgz, -1): could not open file ERROR: loading /Volumes/DATA_PETMR/data_donatienne/Boston_final_analysis/Donatienne/Analyses_freesurfer/recon_flair/unknown/mri/orig.mgz This is needed for RBV
The command line: mri_gtmpvc --i /Volumes/DATA_PETMR/data_donatienne/Boston_final_analysis/VT/Vt_all/${word}_lin_T1.nii.gz --reg /Volumes/DATA_PETMR/data_donatienne/Boston_final_analysis/Donatienne/Analyses_freesurfer/recon_flair/${word}/mri/suv.reg.lta --psf 5 --seg /Volumes/DATA_PETMR/data_donatienne/Boston_final_analysis/Donatienne/Analyses_freesurfer/recon_flair/${word}/mri/gtmseg.mgz --default-seg-merge --auto-mask 5 0.01 --rbv --o /DATA_PETMR/data_donatienne/Boston_final_analysis/VT/Vt_all/${word}/PVC/gtmpvc.output.spmreg --no-rescale
Kind regards Donatienne
Op do 25 apr. 2019 om 17:44 schreef Greve, Douglas N.,Ph.D. < DGREVE@mgh.harvard.edu>:
can you send command line and terminal output?
On 4/25/19 10:37 AM, Donatienne Van Weehaeghe wrote:
External Email - Use CautionDear freesurfer experts,
I am running the rbv pvc correction on a mac system and encountered the following error.
mghRead(/Volumes/DATA_PETMR/data_donatienne/Boston_final_analysis/Donatienne/Analyses_freesurfer/recon_flair/unknown/mri/orig.mgz,
-1): could not open file
The subjects directory is
Volumes/DATA_PETMR/data_donatienne/Boston_final_analysis/Donatienne/Analyses_freesurfer/recon_flair,
the orig files are located in
Volumes/DATA_PETMR/data_donatienne/Boston_final_analysis/Donatienne/Analyses_freesurfer/recon_flair/$subjectname
Thank you!
Kind regards Donatienne
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