Hi, I was trying to preprocess some functional data using the command preproc-sess -fwhm 6 -sf sessid -df sesspar. My subjects study directory is located at /space/troy/1/users/FREESURFER/SM2C2_fsfast/study. The command made it through motion correction, then during smoothing gave me this error:
ERROR:: Environment variable FSLOUTPUTTYPE is not set! Please make sure that the appropriate configuration file is sourced by your shell (e.g. by putting it in .profile). e.g. bash or sh users add the line ". ${FSLDIR}/etc/fslconf/fsl.sh" e.g. tcsh or csh users add the line "source ${FSLDIR}/etc/fslconf/fsl.csh" /tmp/ipfsl_23657 /space/lyon/1/home/inverse/freesurfer_alpha/fsl/bin/ip fmc fmcsm .1 -s 2.54237288135593220338 ERROR: ip failed ERROR: ipfsl failed ERROR: spatialsmooth-sess failed
I have never received this error before and am not sure if I should just set the env. variable or where the .profile is. What is the recommended course of action and is there any reason I got this error now, and never before? Thanks! Margaret