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I would recommend GNU parallel. I have 2 scripts here:
https://github.com/dfsp-spirit/shell-tools/tree/master/gnu_parallel_reconall...
and an explanation of what they do and how to use them at https://www.xsmd.org/brain/2019/03/13/using-gnu-parallel-to-speedup-neuroima...
You need to adjust some stuff, but they should get you going. You need the Bash shell and GNU parallel installed.
Best,
Tim
On September 18, 2019 at 3:07 PM Dev vasu vasudevamurthy.devulapally@gmail.com wrote:
External Email - Use CautionDear all,
I am using - openmp 30 to run recon-all, i see now change in the execution time period.
Could you please highlight me a method to reduce the execution time for recon-all, if possible some parallel script to do that same.
Thanks Vasudev _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Dr. Tim Schäfer Postdoc Computational Neuroimaging Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany