It is looking for a folder called motion.sm3.lh in the current directory. This would have been created when you ran mkanalysis-sess. Does that exist? and does the analysis.info file exist inside it?
On 02/11/2017 02:41 PM, Fatemeh.Molaei-Vaneghi wrote:
Dear FreeSurfers,
I'm trying to perform a block design analysis with fsfast. All the steps up until the selxavg3-sess works quite fine. However, upon using the selxavg3-sess as, for example, in "selxavg3-sess -s Sess01 -a motion.sm3.lh -no-preproc -overwrite" I receive the following error. I'd appreciate any feedbacks on what might be the problem. Thank you.
selxavg3-sess log file /Applications/freesurfer/fsfast/bin/selxavg3-sess -s Sess01 -a motion.sm3.lh -no-preproc -overwrite $Id: selxavg3-sess,v 1.57.2.1 2011/12/09 20:06:47 greve Exp $ uid=501(lab) gid=20(staff) groups=20(staff),12(everyone),61(localaccounts),79(_appserverusr),80(admin),81(_appserveradm),98(_lpadmin),398(com.apple.access_screensharing),401(com.apple.sharepoint.group.1),402(com.apple.sharepoint.group.2),33(_appstore),100(_lpoperator),204(_developer),399(com.apple.access_ssh) /Volumes/DATA/Studies/FS/Sessions Darwin labs-Mac-Pro.local 13.4.0 Darwin Kernel Version 13.4.0: Mon Jan 11 18:17:34 PST 2016; root:xnu-2422.115.15~1/RELEASE_X86_64 x86_64 Sat Feb 11 19:31:58 CET 2017
/Volumes/DATA/Studies/FS/Sessions/Sess01 Sat Feb 11 19:31:58 CET 2017 anadir = /Volumes/DATA/Studies/FS/Sessions/Sess01/bold/motion.sm3.lh
% Sat Feb 11 19:31:58 CET 2017 % /Volumes/DATA/Studies/FS/Sessions % motion.sm3.lh
%-------------------------------- sxa3pwd = '/Volumes/DATA/Studies/FS/Sessions' sxa3cmd = '/Applications/freesurfer/fsfast/bin/selxavg3-sess -s Sess01 -a motion.sm3.lh -no-preproc -overwrite' which fast_selxavg3 okfile = '/tmp/selxavg3-sess-19691.ok'; if(fast_fileexists(okfile)) delete(okfile); end monly = 0; perrun = 0; jkrun = 0; DoGLMFit = 1; DoContrasts = 1; ConList = splitstring('obj-vs-ret objective pursuit retinal'); DoSynth = 0; SynthNoiseAmp = 1; SynthNoiseAR1 = .3; SynthSignalAmp = 0; SynthSeed = -1; sess = '/Volumes/DATA/Studies/FS/Sessions/Sess01'; analysis = 'motion.sm3.lh'; flacname = ''; outtop = ''; DoFWHM = 0; MatlabSaveRes = 0; SaveResUnwhitened = 0; fast_selxavg3; if(~fast_fileexists(okfile) && ~monly); quit; end
quit;
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sxa3pwd =
/Volumes/DATA/Studies/FS/Sessions
sxa3cmd =
/Applications/freesurfer/fsfast/bin/selxavg3-sess -s Sess01 -a motion.sm3.lh -no-preproc -overwrite
/Applications/freesurfer/fsfast/toolbox/fast_selxavg3.m
#@# Sess01 ############################### /Volumes/DATA/Studies/FS/Sessions/Sess01
$Id: fast_selxavg3.m,v 1.100.2.2 2012/11/30 18:40:38 greve Exp $ /Applications/freesurfer/fsfast/toolbox/fast_selxavg3.m /Applications/freesurfer/fsfast/toolbox/fast_ldanaflac.m /Users/lab/Documents/MATLAB/MRIread.m
outtop = /Volumes/DATA/Studies/FS/Sessions Extension format = nii.gz ERROR: could not open motion.sm3.lh/analysis.info
Best, Fatemeh,
Max Planck Institute for Biological Cybernetics Tübingen, Germany _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer