Can you send the recon-all.log file?
On 10/9/2020 12:47 PM, Kathy L. Pearson wrote:
External Email - Use CautionNo, it does not exist, and my question is why not in 7.1.0 when it is created with the same two commands in 5.3.0?
Thanks,
Kathy
Douglas N. Greve Fri, 09 Oct 2020 05:49:32 -0700 does that file exist?
From: Kathy L. Pearson Sent: Thursday, October 8, 2020 11:55 AM To: freesurfer@nmr.mgh.harvard.edu Subject: surf pial_lgi not created in version 7.1.0
In freesurfer version 5.3.0, I can successfully run: recon-all -autorecon-all -mprage -s $subj -qcache -localGI recon-all -s $subj -qcache -measure pial_lgi
However, the same commands with 7.1.0 give an error after this last of a number of generated statements and no surf/*pial_lgi output: mris_preproc --s 147608 --hemi lh --meas pial_lgi --target fsaverage --out lh.pial_lgi.fsaverage.mgh nsubjects = 1 ERROR: cannot find subjects/147608/surf/lh.pial_lgi
Is a new command needed for version 7.1.0?
Thanks,
Kathy Pearson
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