Hi Antonella,
I was running the mri_cvs_register with the flag --noaseg and no argument for my target template so as I understood the registration was done on the cvs template as you can see below:
mri_cvs_register--mov P01 --noaseg
Yes, that is right.
After registration I got 4 files:
combined_tocvs_avg35_elreg_norm.m3z
combined_tocvs_avg35_elreg_norm_aseg.mgz
el_reg_tocvs_avg35.mgz
nlalign-norm.m3z
nlalign-norm.mgz
Is the nlalign-norm.mgz the final result of my CVS and contains contributions from ALL registration steps?
Yes. Also if you type "mri_cvs_register --help" it will produce the description of all the resulting files.
Also is the cvs atlas included in the file that you sent me some time ago called: cvs_avg35?
Yes, it is the full atlas.
--Lilla