Hello,
I'm new to freeSurfer and just starting to look around so I apologize if this question is a bit naive.
When I look at segmentation results, that include deep brain nuclei (thalamus etc) I see that they are all contained inside of the white matter surface. is there away to edit the surface so that these boundaries are represented?
I imagine that this would change the topology of the WM region thus it might be difficult, Is there away to generate surfaces form these regions on there own?
Thanks Luke