I uploaded the dicom mosaic on Martinos Center. I am wondering whether you received it....
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve Sent: Monday, December 5, 2016 12:13 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] mri_convert dcm 'Mosaic' 2 mgz
Can you upload the dicoms to https://gate.nmr.mgh.harvard.edu/filedrop2
On 12/05/2016 12:09 PM, Marianna Riello wrote:
Dear all,
Thank you. I tried but still is showing the same error (check 2Error attachment) Do you have any other suggestions?
Thanks in advance, Marianna
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve Sent: Monday, December 5, 2016 12:00 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] mri_convert dcm 'Mosaic' 2 mgz
Try not including the "-it dicom" arg and see if that works
On 12/05/2016 10:01 AM, Marianna Riello wrote:
Dear all again,
Thanks for your reply. Please check the error attached when trying to convert the DICOM Mosaic in .mgz file when using mri_convert.
Thanks in advance, Marianna
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve Sent: Friday, December 2, 2016 12:17 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] mri_convert dcm 'Mosaic' 2 mgz
It will handle mosaics (as the mosaics that fMRI data will come in). Hard to say what is going on without more specifics (command line, terminal output)
On 12/02/2016 10:26 AM, Marianna Riello wrote:
Dear all,
I am wondering whether mri_convert can compute .mgz files for the reconstructions with the 'Mosaic Format SIEMENS DICOM files'.
I have been computing .mgz with the enhanced format .dcm so far, and it always worked.
I have used mri_convert to compute .mgz from .nii (I previously transformed the mosaic .dcm format in nifti with mricron but the reconstruction failed)
Thanks in advance,
Marianna
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Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
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