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Hello,
Does the fsaverage subject have a wmparc.mgz file?
Thank you, Da-Yea
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Greve, Douglas N.,Ph.D. Sent: Tuesday, December 11, 2018 5:42 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Extracting both the GM and WM ROIs
what do you mean by the white matter region? The aparc only labels cortex, which is, of course, GM. If you mean the WM adjacent to the aparc, have you looked at the wmparc.mgz file?
On 12/11/2018 05:16 PM, Song, Da-Yea wrote:
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Hello,
I've been trying to extract ROIs directly from the Desikan atlas by using the mri_annotation2label and the aparc.annot files from the fsaverage folder.
I noticed that this pulls out the grey matter portion for these regions but was wondering if there was a command or file that I could use to do the same for both the grey and white matter. For example, is it possible to extract the grey and white matter region of the posteriorcingulate (in one file)?
Thank you so much in advance for your help!
Best regards,
Da-yea
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