Hi,
I've tried a few more things since posting my last message but have still not been able to solve the problem with mc-sess where it hangs.
I got rid of the Matlab process manager error by using Matlab 6, but the motion correction process still hangs after opening Matlab and printing
INFO: northog = 6, pct=100.
I also tried to use the bert dataset and had the same output and then it hanged. The exact command I used was mc-sess -sf sessid -df sesspar
I use the PowerPC version of freesurferv4.0.1.
Any help would be appreciated. I attach the log file generated by mc-sess with this email.
Leila
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FREESURFER_HOME: /Software/freesurfer
Build stamp: freesurfer-Darwin-tiger-stable-pub-v4.0.1
Kernel info: Darwin 8.10.0 Power Macintosh
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Message: 3 Date: Tue, 13 Nov 2007 22:08:45 -0500 From: Leila Reddy lreddy@MIT.EDU Subject: [Freesurfer] Error with mc-sess To: freesurfer@nmr.mgh.harvard.edu Message-ID: 20071113220845.pkqf8xeylhs8ggg8@webmail.mit.edu Content-Type: text/plain; charset=ISO-8859-1
Hi,
I recently installed freesurfer, AFNI etc but am having problems with mc-sess. The script runs and gets to the stage in each run where it calls up matlab, enters the MRIwrite command but then gives the message below. It then hangs.
>> >> >> >> >> >> >> >> >> >> INFO: northog = 6, pct = 100 >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> 2007-11-13
18:44:51.464 MATLAB[6569] Process manager already initialized -- can't fully enable headless mode.
I can kill the process (e.g.6569 in the example above) and it moves on to the next run, but without saving anything for the current run.
Does anyone know what I can do to fix it?
Thanks, Leila
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