Hi, I had a question in reference to the following message (posted by Nick Schmansky):
"1. in freesurfer v5, there are now multiple fsaverage subjects with varying number of vertices. fsaverage6 has about 40,000 vertices per hemi, so you can just include the flag:
--target fsaverage6
after the -qcache flag, and it will use that as the target instead of fsaverage (producing files like 'rh.thickness.fsaverage6.mgh', which will have 40K thickness samples)."
As I was also interested in trying this out, I ran the following in v5:
recon-all -qcache -target fsaverage6 -s $subject
However, recon-all failed to find fsaverage6, and I also couldn't manually find it in $FREESURFER_HOME. If this is included in the current distribution, where do I need to look?
Thanks,
Aaron