On Thu, 18 Feb 2016, Z K wrote:
I beleive the .travis.yml does work but it is still under active development.
is there a public clone of freesurfer on github?
The Ubuntu instructions in the linux developers page have been tested on a clean install and should work (https://surfer.nmr.mgh.harvard.edu/fswiki/freesurfer_linux_developers_page).
oh good good -- thanks.. immediate question for 14.04 ubuntu then
--disable-GUI-build -- wouldn't it disable then building all so necessary GUI tools? is there a way to overcome the shortcoming?
However I have not yet tested a build on a Debian system. I will make an attempt to build today on a clean debian "jessie" install.
I would be infinitely grateful if freesurfer could build natively on Debian stable! ;) Thanks for trying. In my case I am trying the build under jessie chroot (using schroot helper), so I could quickly setup/enter such environment while maintaining user/directory. I will do the same now for 14.04. If you would like more -- let me know I could give a bit more detailed instructions.
But I have one question, what branch are you attempting to build, because their is no "stable5_branch-5622-gf3d0bcd" branch in the git repo?
;) it is an output of 'git describe --tags', which bases it on a most recent tag, which was 5622 commits ago and its hexsha f2d0bcd. You could feed this beast to git directly -- it would swallow:
$> git show stable5_branch-5622-gf3d0bcd | head commit f3d0bcd7c4ee8604918725de07c8736191cb1b8f Author: Z K zkaufman@nmr.mgh.harvard.edu Date: Tue Feb 16 17:03:00 2016 -0500
Changed to reference new GCA. -greve
diff --git a/scripts/recon-all b/scripts/recon-all index 6e4ab62..bf35521 100755 --- a/scripts/recon-all +++ b/scripts/recon-all