Hi,
I downloaded the raw data set for the subject called
'bert' and found 3 directories named 001 002 003 under it. And each of the directories contains files from COR-001 to COR-256.
Now the manual says to use mri_convert
I. Data Conversion from the Unix/Linux Command Line Conversion of native MR data to COR format is performed using a process called mri_convert. Enter the mri/orig directory in the Unix/Linux
command
line. This is where the raw MR data files are located. Type in the Unix/Linux command line: mri_convert <name_of_structural_run>/<first_MR_acquisition> Where <name_of_structural_run> refers to the
directory
of the structural run to be converted and <first_MR_acquisition> refers to the first slice of the structural run. For example: mri_convert 002/I.001 Repeat this step for all the structural runs that will be motion corrected and averaged for reconstruction.
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Now my problem is how do I get the file name I.001 which they have shown in the example. Also it says that mri_convert command converts from native
formats
to COR formats and I guess that the Raw Data files downloaded already has the files in COR format.
Basically I want to run the first 3 steps i.e
convert,
motion correction and averagin as shown in the
manual.
Sincerely,
Kushal
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