Hi Joost,
did you try the old one (mris_fix_topology)? Sounds like it failed finding a non-separating loop. What does the unfixed (?h.orig) surface look like? Is something dramatically wrong with it?
cheers, Bruce
On Tue, 16 Sep 2008, j janssen wrote:
Hi,
after a bit more digging i´ve concluded that the orginal topology fixer (mris_fix_topology) failed because: mris_euler_number ../surf/lh.orig
gave
(euler number != 2)
therefore it tries: mris_topo_fixer -mgz -warnings "subjid" lh
which runs for some time and then exits: ERROR: _FindFacePath: could not find path!
any ideas?
- the scan looks (is) crappy due to movement artifacts, which may well be
the cause.
best, -joost
---------- Forwarded message ---------- From: j janssen joost.janssen76@gmail.com Date: Tue, Sep 16, 2008 at 2:05 PM Subject: FindFacePath To: freesurfer@nmr.mgh.harvard.edu
Hi,
using Freesurfer version 4.05 i have a brain that runs through autorecon1 (without errors according to log) but exits with errors during autorecon2. the error given is: "ERROR: _FindFacePath: could not find path!"
other brains in the same set do not give this error message, therefore i assume it must have something to do with the specific brain.
i´ve attached the log-file.
i realize this is little info, let me know what else you need for diagnosis.
thanks, -joost